| Unlockable: | How to Unlock: |
| The Breen | Sha Ka Ree map for Skirmish mode. This is the "God" system from Star Trek V. |
| The Cardassians | Borg Unicomplex map for Skirmish mode. |
| The Dominion | Xindi Skrimish Set which includes the Reptilian cruisers and Insectoid fighters. |
| The Federation | Second Federation Skirmish Set which includes the Sovereign, Nebula, and Oberth vessels. |
| The Klingons | Borg Skirmish Set. |
| The Romulans | Talos IV map for Skirmish mode. This is from "The Cage"/"Menagerie" episodes of the original series. |
